cisbp-rna cey_1_M082 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.955008

Neutral set average density: 0.000675883

Different set average density: 0.000684105

Presence of motif

           motif_present
gene_set    absent present
  different    961      33
  neutral     1889      64

Fisher's exact test: p=1

Binomial GLM: p=0.95078

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2599  -0.2599  -0.2581  -0.2581   2.6147  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -3.38492    0.12710 -26.632   <2e-16 ***
differentTRUE  0.01345    0.21794   0.062    0.951    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 853.06  on 2946  degrees of freedom
Residual deviance: 853.05  on 2945  degrees of freedom
AIC: 857.05

Number of Fisher Scoring iterations: 6