cisbp-rna cey_1_M082 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0133781

Neutral set average density: 0.000874552

Different set average density: 0.0010503

Presence of motif

           motif_present
gene_set    absent present
  different    635     359
  neutral     1337     616

Fisher's exact test: p=0.0130099

Binomial GLM: p=0.012627

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9467  -0.8706  -0.8706   1.4272   1.5191  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.77494    0.04870 -15.914   <2e-16 ***
differentTRUE  0.20463    0.08205   2.494   0.0126 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3741.4  on 2946  degrees of freedom
Residual deviance: 3735.2  on 2945  degrees of freedom
AIC: 3739.2

Number of Fisher Scoring iterations: 4