cisbp-rna cey_1_M082 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.884126

Neutral set average density: 0.000481311

Different set average density: 0.000462777

Presence of motif

           motif_present
gene_set    absent present
  different    973      21
  neutral     1909      44

Fisher's exact test: p=0.894742

Binomial GLM: p=0.806384

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2135  -0.2135  -0.2135  -0.2067   2.7775  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -3.77015    0.15248 -24.726   <2e-16 ***
differentTRUE -0.06572    0.26813  -0.245    0.806    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 624.40  on 2946  degrees of freedom
Residual deviance: 624.34  on 2945  degrees of freedom
AIC: 628.34

Number of Fisher Scoring iterations: 6