cisbp-rna cey_1_M111 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.569017

Neutral set average density: 0.000378904

Different set average density: 0.000442656

Presence of motif

           motif_present
gene_set    absent present
  different    972      22
  neutral     1916      37

Fisher's exact test: p=0.579084

Binomial GLM: p=0.559537

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2116  -0.2116  -0.1956  -0.1956   2.8165  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.9471     0.1660 -23.783   <2e-16 ***
differentTRUE   0.1588     0.2721   0.584     0.56    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 578.31  on 2946  degrees of freedom
Residual deviance: 577.97  on 2945  degrees of freedom
AIC: 581.97

Number of Fisher Scoring iterations: 6