cisbp-rna cey_1_M111 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.100741

Neutral set average density: 0.000415771

Different set average density: 0.000480885

Presence of motif

           motif_present
gene_set    absent present
  different    795     199
  neutral     1605     348

Fisher's exact test: p=0.14657

Binomial GLM: p=0.146366

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6684  -0.6684  -0.6265  -0.6265   1.8574  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.52868    0.05913 -25.852   <2e-16 ***
differentTRUE  0.14364    0.09889   1.452    0.146    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2827.9  on 2946  degrees of freedom
Residual deviance: 2825.8  on 2945  degrees of freedom
AIC: 2829.8

Number of Fisher Scoring iterations: 4