cisbp-rna cey_1_M111 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.776586

Neutral set average density: 0.000256016

Different set average density: 0.00028169

Presence of motif

           motif_present
gene_set    absent present
  different    980      14
  neutral     1928      25

Fisher's exact test: p=0.86479

Binomial GLM: p=0.77319

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1684  -0.1684  -0.1605  -0.1605   2.9524  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -4.34536    0.20129 -21.587   <2e-16 ***
differentTRUE  0.09687    0.33611   0.288    0.773    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 414.83  on 2946  degrees of freedom
Residual deviance: 414.75  on 2945  degrees of freedom
AIC: 418.75

Number of Fisher Scoring iterations: 7