cisbp-rna cey_1_M250 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.113592

Neutral set average density: 0.000225294

Different set average density: 0.000382294

Presence of motif

           motif_present
gene_set    absent present
  different    975      19
  neutral     1931      22

Fisher's exact test: p=0.0964762

Binomial GLM: p=0.0890343

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1965  -0.1965  -0.1505  -0.1505   2.9954  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.4748     0.2144 -20.870   <2e-16 ***
differentTRUE   0.5368     0.3156   1.701    0.089 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 431.97  on 2946  degrees of freedom
Residual deviance: 429.15  on 2945  degrees of freedom
AIC: 433.15

Number of Fisher Scoring iterations: 7