cisbp-rna cey_1_M250 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.666027

Neutral set average density: 0.000450589

Different set average density: 0.000402414

Presence of motif

           motif_present
gene_set    absent present
  different    974      20
  neutral     1909      44

Fisher's exact test: p=0.789392

Binomial GLM: p=0.671612

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2135  -0.2135  -0.2135  -0.2016   2.7950  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.7701     0.1525 -24.726   <2e-16 ***
differentTRUE  -0.1155     0.2725  -0.424    0.672    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 616.80  on 2946  degrees of freedom
Residual deviance: 616.61  on 2945  degrees of freedom
AIC: 620.61

Number of Fisher Scoring iterations: 6