cisbp-rna cey_1_M250 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0655826

Neutral set average density: 0.000770097

Different set average density: 0.000865191

Presence of motif

           motif_present
gene_set    absent present
  different    650     344
  neutral     1355     598

Fisher's exact test: p=0.0298357

Binomial GLM: p=0.0282579

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9217  -0.8551  -0.8551   1.4568   1.5385  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.81797    0.04909 -16.661   <2e-16 ***
differentTRUE  0.18164    0.08280   2.194   0.0283 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3693.2  on 2946  degrees of freedom
Residual deviance: 3688.4  on 2945  degrees of freedom
AIC: 3692.4

Number of Fisher Scoring iterations: 4