cisbp-rna cey_1_M254 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.079302

Neutral set average density: 0.000133129

Different set average density: 0.00028169

Presence of motif

           motif_present
gene_set    absent present
  different    980      14
  neutral     1941      12

Fisher's exact test: p=0.0366327

Binomial GLM: p=0.0341287

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1684  -0.1684  -0.1110  -0.1110   3.1913  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.0861     0.2896 -17.564   <2e-16 ***
differentTRUE   0.8376     0.3953   2.119   0.0341 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 297.75  on 2946  degrees of freedom
Residual deviance: 293.30  on 2945  degrees of freedom
AIC: 297.3

Number of Fisher Scoring iterations: 8