cisbp-rna cey_1_M254 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.942523

Neutral set average density: 0.000491551

Different set average density: 0.000482897

Presence of motif

           motif_present
gene_set    absent present
  different    970      24
  neutral     1905      48

Fisher's exact test: p=1

Binomial GLM: p=0.942654

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2231  -0.2231  -0.2231  -0.2211   2.7290  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -3.68104    0.14614 -25.188   <2e-16 ***
differentTRUE -0.01821    0.25309  -0.072    0.943    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 676.74  on 2946  degrees of freedom
Residual deviance: 676.73  on 2945  degrees of freedom
AIC: 680.73

Number of Fisher Scoring iterations: 6