cisbp-rna cey_1_M254 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0136942

Neutral set average density: 0.000567332

Different set average density: 0.000682093

Presence of motif

           motif_present
gene_set    absent present
  different    714     280
  neutral     1499     454

Fisher's exact test: p=0.00392401

Binomial GLM: p=0.00352748

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8135  -0.7274  -0.7274  -0.7274   1.7082  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.19446    0.05357 -22.297  < 2e-16 ***
differentTRUE  0.25836    0.08855   2.918  0.00353 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3308.3  on 2946  degrees of freedom
Residual deviance: 3299.9  on 2945  degrees of freedom
AIC: 3303.9

Number of Fisher Scoring iterations: 4