cisbp-rna cey_1_M254 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.224437

Neutral set average density: 0.000276498

Different set average density: 0.000402414

Presence of motif

           motif_present
gene_set    absent present
  different    974      20
  neutral     1926      27

Fisher's exact test: p=0.214267

Binomial GLM: p=0.199696

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2016  -0.2016  -0.1669  -0.1669   2.9262  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.2674     0.1938 -22.020   <2e-16 ***
differentTRUE   0.3817     0.2976   1.282      0.2    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 482.26  on 2946  degrees of freedom
Residual deviance: 480.65  on 2945  degrees of freedom
AIC: 484.65

Number of Fisher Scoring iterations: 7