cisbp-rna etr_1_M174 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=7.22032e-07

Neutral set average density: 0.00390169

Different set average density: 0.00227364

Presence of motif

           motif_present
gene_set    absent present
  different    897      97
  neutral     1626     327

Fisher's exact test: p=2.15802e-07

Binomial GLM: p=4.42202e-07

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6054  -0.6054  -0.6054  -0.4532   2.1573  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.60392    0.06061  -26.46  < 2e-16 ***
differentTRUE -0.62043    0.12286   -5.05 4.42e-07 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2428.0  on 2946  degrees of freedom
Residual deviance: 2400.4  on 2945  degrees of freedom
AIC: 2404.4

Number of Fisher Scoring iterations: 4