cisbp-rna etr_1_M174 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.00686572

Neutral set average density: 0.00161802

Different set average density: 0.0010664

Presence of motif

           motif_present
gene_set    absent present
  different    944      50
  neutral     1811     142

Fisher's exact test: p=0.0218332

Binomial GLM: p=0.020471

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3886  -0.3886  -0.3886  -0.3213   2.4453  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.54581    0.08715 -29.213   <2e-16 ***
differentTRUE -0.39230    0.16927  -2.318   0.0205 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1419.9  on 2946  degrees of freedom
Residual deviance: 1414.3  on 2945  degrees of freedom
AIC: 1418.3

Number of Fisher Scoring iterations: 5