cisbp-rna etr_1_M174 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00399439

Neutral set average density: 0.00102099

Different set average density: 0.000853119

Presence of motif

           motif_present
gene_set    absent present
  different    676     318
  neutral     1212     741

Fisher's exact test: p=0.00153467

Binomial GLM: p=0.00147809

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9768  -0.9768  -0.8781   1.3922   1.5098  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.49203    0.04663 -10.551  < 2e-16 ***
differentTRUE -0.26212    0.08245  -3.179  0.00148 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3849.0  on 2946  degrees of freedom
Residual deviance: 3838.8  on 2945  degrees of freedom
AIC: 3842.8

Number of Fisher Scoring iterations: 4