cisbp-rna etr_1_M174 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0101253

Neutral set average density: 0.00430108

Different set average density: 0.00336016

Presence of motif

           motif_present
gene_set    absent present
  different    852     142
  neutral     1602     351

Fisher's exact test: p=0.0121679

Binomial GLM: p=0.0114054

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6295  -0.6295  -0.6295  -0.5553   1.9728  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.51822    0.05893  -25.76   <2e-16 ***
differentTRUE -0.27354    0.10812   -2.53   0.0114 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2661.5  on 2946  degrees of freedom
Residual deviance: 2654.9  on 2945  degrees of freedom
AIC: 2658.9

Number of Fisher Scoring iterations: 4