cisbp-rna exc_7_M014 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.813667

Neutral set average density: 0.000337942

Different set average density: 0.000362173

Presence of motif

           motif_present
gene_set    absent present
  different    976      18
  neutral     1920      33

Fisher's exact test: p=0.881362

Binomial GLM: p=0.811568

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1912  -0.1912  -0.1846  -0.1846   2.8568  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -4.06357    0.17557 -23.145   <2e-16 ***
differentTRUE  0.07048    0.29564   0.238    0.812    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 514.90  on 2946  degrees of freedom
Residual deviance: 514.84  on 2945  degrees of freedom
AIC: 518.84

Number of Fisher Scoring iterations: 7