cisbp-rna exc_7_M014 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.804834

Neutral set average density: 0.000512033

Different set average density: 0.00054326

Presence of motif

           motif_present
gene_set    absent present
  different    967      27
  neutral     1904      49

Fisher's exact test: p=0.714402

Binomial GLM: p=0.737139

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2347  -0.2347  -0.2254  -0.2254   2.7149  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -3.65989    0.14468 -25.296   <2e-16 ***
differentTRUE  0.08153    0.24291   0.336    0.737    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 706.01  on 2946  degrees of freedom
Residual deviance: 705.90  on 2945  degrees of freedom
AIC: 709.9

Number of Fisher Scoring iterations: 6