cisbp-rna exc_7_M014 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.361833

Neutral set average density: 0.000305172

Different set average density: 0.000277666

Presence of motif

           motif_present
gene_set    absent present
  different    865     129
  neutral     1689     264

Fisher's exact test: p=0.731005

Binomial GLM: p=0.683638

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5389  -0.5389  -0.5389  -0.5273   2.0208  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.85594    0.06618 -28.043   <2e-16 ***
differentTRUE -0.04697    0.11527  -0.408    0.684    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2314.7  on 2946  degrees of freedom
Residual deviance: 2314.5  on 2945  degrees of freedom
AIC: 2318.5

Number of Fisher Scoring iterations: 4