cisbp-rna exc_7_M014 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0461047

Neutral set average density: 0.000512033

Different set average density: 0.000301811

Presence of motif

           motif_present
gene_set    absent present
  different    979      15
  neutral     1903      50

Fisher's exact test: p=0.0836682

Binomial GLM: p=0.0693954

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2278  -0.2278  -0.2278  -0.1744   2.8961  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.6392     0.1433 -25.401   <2e-16 ***
differentTRUE  -0.5393     0.2970  -1.816   0.0694 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 624.4  on 2946  degrees of freedom
Residual deviance: 620.8  on 2945  degrees of freedom
AIC: 624.8

Number of Fisher Scoring iterations: 7