cisbp-rna fox_1_M017 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.166817

Neutral set average density: 0.00016385

Different set average density: 0.00028169

Presence of motif

           motif_present
gene_set    absent present
  different    980      14
  neutral     1937      16

Fisher's exact test: p=0.172685

Binomial GLM: p=0.13664

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1684  -0.1684  -0.1283  -0.1283   3.0998  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.7963     0.2510 -19.107   <2e-16 ***
differentTRUE   0.5478     0.3680   1.488    0.137    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 334.93  on 2946  degrees of freedom
Residual deviance: 332.77  on 2945  degrees of freedom
AIC: 336.77

Number of Fisher Scoring iterations: 7