cisbp-rna fox_1_M017 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.108657

Neutral set average density: 6.14439e-05

Different set average density: 0.000160966

Presence of motif

           motif_present
gene_set    absent present
  different    986       8
  neutral     1947       6

Fisher's exact test: p=0.0864307

Binomial GLM: p=0.0737952

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1271  -0.1271  -0.0784  -0.0784   3.4016  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.7823     0.4089 -14.142   <2e-16 ***
differentTRUE   0.9681     0.5415   1.788   0.0738 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 177.72  on 2946  degrees of freedom
Residual deviance: 174.50  on 2945  degrees of freedom
AIC: 178.5

Number of Fisher Scoring iterations: 8