cisbp-rna fox_1_M017 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.293116

Neutral set average density: 0.000234511

Different set average density: 0.000207243

Presence of motif

           motif_present
gene_set    absent present
  different    898      96
  neutral     1737     216

Fisher's exact test: p=0.254752

Binomial GLM: p=0.242497

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4842  -0.4842  -0.4842  -0.4507   2.1621  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.08464    0.07215 -28.895   <2e-16 ***
differentTRUE -0.15119    0.12935  -1.169    0.242    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1991.0  on 2946  degrees of freedom
Residual deviance: 1989.6  on 2945  degrees of freedom
AIC: 1993.6

Number of Fisher Scoring iterations: 4