cisbp-rna fox_1_M017 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.974002

Neutral set average density: 0.000102407

Different set average density: 0.000100604

Presence of motif

           motif_present
gene_set    absent present
  different    989       5
  neutral     1943      10

Fisher's exact test: p=1

Binomial GLM: p=0.974063

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1013  -0.1013  -0.1013  -0.1004   3.2534  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -5.26940    0.31704 -16.621   <2e-16 ***
differentTRUE -0.01785    0.54911  -0.033    0.974    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 188.34  on 2946  degrees of freedom
Residual deviance: 188.34  on 2945  degrees of freedom
AIC: 192.34

Number of Fisher Scoring iterations: 8