cisbp-rna gld_1_M113 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.633781

Neutral set average density: 8.19252e-05

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1945       8

Fisher's exact test: p=0.75978

Binomial GLM: p=0.651245

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0906  -0.0906  -0.0906  -0.0778   3.4068  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.4936     0.3543 -15.506   <2e-16 ***
differentTRUE  -0.3065     0.6781  -0.452    0.651    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 144.95  on 2946  degrees of freedom
Residual deviance: 144.74  on 2945  degrees of freedom
AIC: 148.74

Number of Fisher Scoring iterations: 8