cisbp-rna gld_1_M113 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.17485

Neutral set average density: 4.60829e-05

Different set average density: 6.43863e-05

Presence of motif

           motif_present
gene_set    absent present
  different    963      31
  neutral     1909      44

Fisher's exact test: p=0.17368

Binomial GLM: p=0.16005

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2517  -0.2517  -0.2135  -0.2135   2.7542  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.7701     0.1525 -24.726   <2e-16 ***
differentTRUE   0.3341     0.2378   1.405     0.16    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 698.73  on 2946  degrees of freedom
Residual deviance: 696.80  on 2945  degrees of freedom
AIC: 700.8

Number of Fisher Scoring iterations: 6