cisbp-rna mec_8_M172 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.0293223

Neutral set average density: 0.00016385

Different set average density: 0.000382294

Presence of motif

           motif_present
gene_set    absent present
  different    976      18
  neutral     1937      16

Fisher's exact test: p=0.0268012

Binomial GLM: p=0.0201984

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1912  -0.1912  -0.1283  -0.1283   3.0998  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.7963     0.2510 -19.107   <2e-16 ***
differentTRUE   0.8032     0.3458   2.323   0.0202 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 371.03  on 2946  degrees of freedom
Residual deviance: 365.69  on 2945  degrees of freedom
AIC: 369.69

Number of Fisher Scoring iterations: 7