cisbp-rna mec_8_M172 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0707035

Neutral set average density: 0.000204813

Different set average density: 0.000382294

Presence of motif

           motif_present
gene_set    absent present
  different    975      19
  neutral     1933      20

Fisher's exact test: p=0.0594649

Binomial GLM: p=0.0498191

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1965  -0.1965  -0.1435  -0.1435   3.0270  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.5711     0.2248 -20.338   <2e-16 ***
differentTRUE   0.6331     0.3228   1.962   0.0498 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 414.83  on 2946  degrees of freedom
Residual deviance: 411.06  on 2945  degrees of freedom
AIC: 415.06

Number of Fisher Scoring iterations: 7