cisbp-rna mec_8_M172 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.905659

Neutral set average density: 0.000412698

Different set average density: 0.000408451

Presence of motif

           motif_present
gene_set    absent present
  different    811     183
  neutral     1603     350

Fisher's exact test: p=0.761426

Binomial GLM: p=0.744219

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6379  -0.6379  -0.6285  -0.6285   1.8543  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.52170    0.05900 -25.792   <2e-16 ***
differentTRUE  0.03292    0.10089   0.326    0.744    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2786.1  on 2946  degrees of freedom
Residual deviance: 2786.0  on 2945  degrees of freedom
AIC: 2790

Number of Fisher Scoring iterations: 4