cisbp-rna mec_8_M172 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.435991

Neutral set average density: 0.000266257

Different set average density: 0.000342052

Presence of motif

           motif_present
gene_set    absent present
  different    977      17
  neutral     1927      26

Fisher's exact test: p=0.419964

Binomial GLM: p=0.418468

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1857  -0.1857  -0.1637  -0.1637   2.9391  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.3056     0.1974 -21.808   <2e-16 ***
differentTRUE   0.2543     0.3144   0.809    0.418    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 448.92  on 2946  degrees of freedom
Residual deviance: 448.28  on 2945  degrees of freedom
AIC: 452.28

Number of Fisher Scoring iterations: 7