cisbp-rna mex_3_M122 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.48214

Neutral set average density: 0.000235535

Different set average density: 0.000181087

Presence of motif

           motif_present
gene_set    absent present
  different    985       9
  neutral     1930      23

Fisher's exact test: p=0.576343

Binomial GLM: p=0.501396

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1539  -0.1539  -0.1539  -0.1349   3.0674  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.4298     0.2098 -21.119   <2e-16 ***
differentTRUE  -0.2656     0.3951  -0.672    0.501    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 353.11  on 2946  degrees of freedom
Residual deviance: 352.64  on 2945  degrees of freedom
AIC: 356.64

Number of Fisher Scoring iterations: 7