cisbp-rna mex_3_M122 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.011617

Neutral set average density: 0.000122888

Different set average density: 2.01207e-05

Presence of motif

           motif_present
gene_set    absent present
  different    993       1
  neutral     1941      12

Fisher's exact test: p=0.072773

Binomial GLM: p=0.0814378

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1110  -0.1110  -0.1110  -0.0449   3.7153  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.0861     0.2896 -17.564   <2e-16 ***
differentTRUE  -1.8147     1.0415  -1.742   0.0814 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 166.96  on 2946  degrees of freedom
Residual deviance: 161.94  on 2945  degrees of freedom
AIC: 165.94

Number of Fisher Scoring iterations: 9