cisbp-rna mex_3_M122 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.266448

Neutral set average density: 0.000171019

Different set average density: 0.000146881

Presence of motif

           motif_present
gene_set    absent present
  different    923      71
  neutral     1794     159

Fisher's exact test: p=0.38345

Binomial GLM: p=0.339734

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4121  -0.4121  -0.4121  -0.3850   2.2974  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.42330    0.08274 -29.286   <2e-16 ***
differentTRUE -0.14165    0.14837  -0.955     0.34    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1614.8  on 2946  degrees of freedom
Residual deviance: 1613.9  on 2945  degrees of freedom
AIC: 1617.9

Number of Fisher Scoring iterations: 5