cisbp-rna mex_3_M122 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.281882

Neutral set average density: 0.000112647

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1942      11

Fisher's exact test: p=0.407208

Binomial GLM: p=0.336949

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1063  -0.1063  -0.1063  -0.0778   3.4068  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.1736     0.3024  -17.11   <2e-16 ***
differentTRUE  -0.6265     0.6525   -0.96    0.337    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 177.72  on 2946  degrees of freedom
Residual deviance: 176.69  on 2945  degrees of freedom
AIC: 180.69

Number of Fisher Scoring iterations: 8