cisbp-rna mex_6_M038 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.282119

Neutral set average density: 0.00137225

Different set average density: 0.00160966

Presence of motif

           motif_present
gene_set    absent present
  different    917      77
  neutral     1832     121

Fisher's exact test: p=0.119638

Binomial GLM: p=0.112544

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4016  -0.4016  -0.3577  -0.3577   2.3585  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.71737    0.09386 -28.951   <2e-16 ***
differentTRUE  0.24007    0.15129   1.587    0.113    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1451.7  on 2946  degrees of freedom
Residual deviance: 1449.2  on 2945  degrees of freedom
AIC: 1453.2

Number of Fisher Scoring iterations: 5