cisbp-rna mex_6_M038 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.920859

Neutral set average density: 0.000719918

Different set average density: 0.000714286

Presence of motif

           motif_present
gene_set    absent present
  different    726     268
  neutral     1411     542

Fisher's exact test: p=0.662743

Binomial GLM: p=0.64955

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8063  -0.8063  -0.7927   1.6012   1.6191  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.95679    0.05053 -18.933   <2e-16 ***
differentTRUE -0.03978    0.08754  -0.454     0.65    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3465.8  on 2946  degrees of freedom
Residual deviance: 3465.6  on 2945  degrees of freedom
AIC: 3469.6

Number of Fisher Scoring iterations: 4