cisbp-rna mex_6_M038 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.28575e-06

Neutral set average density: 0.00205837

Different set average density: 0.00100604

Presence of motif

           motif_present
gene_set    absent present
  different    950      44
  neutral     1769     184

Fisher's exact test: p=8.38911e-07

Binomial GLM: p=2.74945e-06

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4449  -0.4449  -0.4449  -0.3009   2.4970  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.26323    0.07746 -29.218  < 2e-16 ***
differentTRUE -0.80904    0.17255  -4.689 2.75e-06 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1604.9  on 2946  degrees of freedom
Residual deviance: 1579.7  on 2945  degrees of freedom
AIC: 1583.7

Number of Fisher Scoring iterations: 5