cisbp-rna msi_1_M040 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0429242

Neutral set average density: 7.47568e-05

Different set average density: 4.82897e-05

Presence of motif

           motif_present
gene_set    absent present
  different    970      24
  neutral     1881      72

Fisher's exact test: p=0.0785261

Binomial GLM: p=0.067881

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2741  -0.2741  -0.2741  -0.2211   2.7290  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.2629     0.1201 -27.171   <2e-16 ***
differentTRUE  -0.4363     0.2390  -1.826   0.0679 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 846.28  on 2946  degrees of freedom
Residual deviance: 842.73  on 2945  degrees of freedom
AIC: 846.73

Number of Fisher Scoring iterations: 6