cisbp-rna msi_1_M040 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.687671

Neutral set average density: 6.14439e-05

Different set average density: 8.04829e-05

Presence of motif

           motif_present
gene_set    absent present
  different    990       4
  neutral     1947       6

Fisher's exact test: p=0.741115

Binomial GLM: p=0.675304

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0898  -0.0898  -0.0784  -0.0784   3.4016  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.7823     0.4089 -14.142   <2e-16 ***
differentTRUE   0.2709     0.6467   0.419    0.675    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 133.69  on 2946  degrees of freedom
Residual deviance: 133.51  on 2945  degrees of freedom
AIC: 137.51

Number of Fisher Scoring iterations: 8