cisbp-rna msi_1_M167 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.0307084

Neutral set average density: 0.000102407

Different set average density: 2.01207e-05

Presence of motif

           motif_present
gene_set    absent present
  different    993       1
  neutral     1943      10

Fisher's exact test: p=0.111954

Binomial GLM: p=0.120075

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1013  -0.1013  -0.1013  -0.0449   3.7153  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     -5.269      0.317 -16.621   <2e-16 ***
differentTRUE   -1.631      1.050  -1.554     0.12    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 144.95  on 2946  degrees of freedom
Residual deviance: 141.24  on 2945  degrees of freedom
AIC: 145.24

Number of Fisher Scoring iterations: 9