cisbp-rna msi_1_M167 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0153078

Neutral set average density: 9.11418e-05

Different set average density: 5.6338e-05

Presence of motif

           motif_present
gene_set    absent present
  different    966      28
  neutral     1867      86

Fisher's exact test: p=0.0341727

Binomial GLM: p=0.0362178

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3001  -0.3001  -0.3001  -0.2391   2.6719  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.0777     0.1103 -27.906   <2e-16 ***
differentTRUE  -0.4632     0.2212  -2.094   0.0362 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 965.07  on 2946  degrees of freedom
Residual deviance: 960.37  on 2945  degrees of freedom
AIC: 964.37

Number of Fisher Scoring iterations: 6