cisbp-rna msi_1_M167 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.876686

Neutral set average density: 9.21659e-05

Different set average density: 0.000100604

Presence of motif

           motif_present
gene_set    absent present
  different    989       5
  neutral     1944       9

Fisher's exact test: p=1

Binomial GLM: p=0.874911

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1004  -0.1004  -0.0961  -0.0961   3.2802  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -5.37528    0.33410 -16.089   <2e-16 ***
differentTRUE  0.08802    0.55914   0.157    0.875    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 177.72  on 2946  degrees of freedom
Residual deviance: 177.69  on 2945  degrees of freedom
AIC: 181.69

Number of Fisher Scoring iterations: 8