cisbp-rna pab_1_M130 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.756875

Neutral set average density: 0.00231439

Different set average density: 0.00239437

Presence of motif

           motif_present
gene_set    absent present
  different    877     117
  neutral     1735     218

Fisher's exact test: p=0.623828

Binomial GLM: p=0.622844

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5005  -0.5005  -0.4865  -0.4865   2.0941  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.07427    0.07186 -28.867   <2e-16 ***
differentTRUE  0.05993    0.12186   0.492    0.623    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2087.2  on 2946  degrees of freedom
Residual deviance: 2087.0  on 2945  degrees of freedom
AIC: 2091

Number of Fisher Scoring iterations: 4