cisbp-rna pab_1_M130 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.000213458

Neutral set average density: 0.00278546

Different set average density: 0.00181087

Presence of motif

           motif_present
gene_set    absent present
  different    911      83
  neutral     1706     247

Fisher's exact test: p=0.000417778

Binomial GLM: p=0.000513525

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5200  -0.5200  -0.5200  -0.4176   2.2284  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.93252    0.06808 -28.386  < 2e-16 ***
differentTRUE -0.46318    0.13334  -3.474 0.000514 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2066.6  on 2946  degrees of freedom
Residual deviance: 2053.8  on 2945  degrees of freedom
AIC: 2057.8

Number of Fisher Scoring iterations: 5