cisbp-rna pab_1_M130 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.534253

Neutral set average density: 0.00324629

Different set average density: 0.00332998

Presence of motif

           motif_present
gene_set    absent present
  different    278     716
  neutral      519    1434

Fisher's exact test: p=0.429982

Binomial GLM: p=0.420825

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.628  -1.596   0.786   0.786   0.810  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.01632    0.05123  19.840   <2e-16 ***
differentTRUE -0.07026    0.08728  -0.805    0.421    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3440.3  on 2946  degrees of freedom
Residual deviance: 3439.7  on 2945  degrees of freedom
AIC: 3443.7

Number of Fisher Scoring iterations: 4