cisbp-rna pab_1_M130 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.807643

Neutral set average density: 0.00175115

Different set average density: 0.00181087

Presence of motif

           motif_present
gene_set    absent present
  different    913      81
  neutral     1790     163

Fisher's exact test: p=0.88771

Binomial GLM: p=0.854251

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4175  -0.4175  -0.4175  -0.4123   2.2393  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.39622    0.08181 -29.288   <2e-16 ***
differentTRUE -0.02607    0.14190  -0.184    0.854    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1683  on 2946  degrees of freedom
Residual deviance: 1683  on 2945  degrees of freedom
AIC: 1687

Number of Fisher Scoring iterations: 5