cisbp-rna pabp_2_M148 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.00728497

Neutral set average density: 0.000665643

Different set average density: 0.00118712

Presence of motif

           motif_present
gene_set    absent present
  different    942      52
  neutral     1895      58

Fisher's exact test: p=0.00279367

Binomial GLM: p=0.0025027

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3278  -0.3278  -0.2455  -0.2455   2.6521  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.4865     0.1333 -26.155   <2e-16 ***
differentTRUE   0.5898     0.1951   3.023   0.0025 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 939.22  on 2946  degrees of freedom
Residual deviance: 930.28  on 2945  degrees of freedom
AIC: 934.28

Number of Fisher Scoring iterations: 6