cisbp-rna pabp_2_M148 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.00754238

Neutral set average density: 0.00134153

Different set average density: 0.00084507

Presence of motif

           motif_present
gene_set    absent present
  different    956      38
  neutral     1831     122

Fisher's exact test: p=0.00582714

Binomial GLM: p=0.00655507

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3592  -0.3592  -0.3592  -0.2792   2.5551  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -2.7086     0.0935 -28.968  < 2e-16 ***
differentTRUE  -0.5166     0.1900  -2.719  0.00656 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1243.4  on 2946  degrees of freedom
Residual deviance: 1235.5  on 2945  degrees of freedom
AIC: 1239.5

Number of Fisher Scoring iterations: 6