cisbp-rna pabp_2_M148 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000739688

Neutral set average density: 0.00211674

Different set average density: 0.00251308

Presence of motif

           motif_present
gene_set    absent present
  different    382     612
  neutral      860    1093

Fisher's exact test: p=0.00396472

Binomial GLM: p=0.00360724

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.3830  -1.2808   0.9849   1.0774   1.0774  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.23975    0.04558   5.260 1.44e-07 ***
differentTRUE  0.23156    0.07956   2.911  0.00361 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4012.4  on 2946  degrees of freedom
Residual deviance: 4003.8  on 2945  degrees of freedom
AIC: 4007.8

Number of Fisher Scoring iterations: 4